https://damontoth.r-universe.devRecent package updates in damontothR-universehttps://github.com/damontoth.pnghttps://damontoth.r-universe.devTue, 20 Oct 2026 18:52:39 GMTdamon.toth@hsc.utah.edu (Damon Toth)Model infectious disease dynamics in populations with multiple subgroups having different vaccination rates, transmission characteristics, and contact patterns. Calculate final and intermediate outbreak sizes, form age-structured contact models with automatic fetching of U.S. census data, and explore vaccination scenarios with an interactive 'shiny' dashboard for a model with two subgroups, as described in Nguyen et al. (2024) <doi:10.1016/j.jval.2024.03.039> and Duong et al. (2026) <doi:10.1093/ofid/ofaf695.217>.https://github.com/r-universe/epiforesite/actions/runs/39487793411Tue, 20 Oct 2026 18:52:39 GMTmultigroup.vaccine0.1.1successhttps://epiforesite.r-universe.devhttps://github.com/EpiForeSITE/multigroup-vaccinecontact_matrix_examples.Rmdcontact_matrix_examples.htmlContact Matrix Examples2025-11-20 21:02:342026-09-25 22:43:14run_model_on_command_line.Rmdrun_model_on_command_line.htmlGetting Started Example2025-03-04 20:51:392026-09-25 22:43:14measles_agemodel.Rmdmeasles_agemodel.htmlMeasles Age-Structured Model2025-07-07 20:33:572026-09-25 22:43:14census_functions_demo.Rmdcensus_functions_demo.htmlUsing Census Data Functions2026-01-14 23:08:402026-09-25 22:43:14damon.toth@hsc.utah.edu (Damon Toth)Calculate useful quantities for a user-defined differential equation model of infectious disease transmission among individuals in a healthcare facility. Input rates of transition between states of individuals with and without the disease-causing organism, distributions of states at facility admission, relative infectivity of transmissible states, and the facility length of stay distribution. Calculate the model equilibrium and the basic facility reproduction number, as described in Toth et al. (2025) <doi:10.1371/journal.pcbi.1013577>.https://github.com/r-universe/epiforesite/actions/runs/37089273892Fri, 02 Oct 2026 23:54:08 GMTfacilityepimath0.2.3successhttps://epiforesite.r-universe.devhttps://github.com/EpiForeSITE/facilityepimathequilibrium-and-R0.Rmdequilibrium-and-R0.htmlFacility basic reproduction number and equilibrium calculations2025-01-09 22:20:322025-11-06 21:43:26damon.toth@hsc.utah.edu (Damon Toth)Quantify outbreak risk posed by individual importers of a transmissible pathogen. Input parameters of negative binomial offspring distributions for the number of transmissions from each infected individual and initial number of infected. Calculate probabilities of final outbreak size and generations of transmission, as described in Toth et al. (2015) <doi:10.3201/eid2108.150170> and Toth et al. (2016) <doi:10.1016/j.epidem.2016.04.002>.https://github.com/r-universe/epiforesite/actions/runs/37927612765Fri, 02 Oct 2026 23:53:13 GMTbranchingprocess0.2.0successhttps://epiforesite.r-universe.devhttps://github.com/EpiForeSITE/branchingprocessH5N1Example.RmdH5N1Example.htmlH5N1 Example2024-08-06 19:35:032025-04-22 19:26:43